BioTech DNA-in-the-News

Brock Lewis, Seward, son of Mike and Staci Lewis, bioinformatics. Isaac Lindgren, Blair, son of Paul and Michelle Lindgren, computer engineering. Berkley Lyman, Papillion-La Vista, daughter of Terry and Kay Lyman, information assurance.
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"I knew there would be rare variation but had no idea there would be so much of it," said the senior author of the research, John Novembre, an assistant professor of ecology and evolutionary biology and of bioinformatics at UCLA.
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ScienceDaily (May 17, 2012) — Researchers at the SIB Swiss Institute of Bioinformatics and the EMBL-European Bioinformatics Institute have confirmed the long-held belief that studying the genes we share with other animals is useful.
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Researchers have confirmed the long-held belief that studying the genes we share with other animals is useful. The study shows how bioinformatics makes it ...
www.sciencedaily.com/releases/2012/05/120517192929.htm

The SynBio Accerlator Program was conceived by Andrew Hessel, Co-Chair of SU's Biotechnology and Bioinformatics track, and John Cumbers, Ph.D, a synthetic biologist at NASA Ames Research Center. As Andrew Hessel explains, "advances in technology are ...
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I used to study molecular biology and computer science after getting a PhD in Bioinformatics.” That earned a double take. In a small meeting room tucked away within Zynga's mammoth corporate headquarters, I'm listening to Game Doctors co-founder ...
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Researchers at the SIB Swiss Institute of Bioinformatics and the EMBL-European Bioinformatics Institute have confirmed the long-held belief that studying the genes we share with other animals is useful. The study, published today in the open access ...
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On the contrary to the age-group analogy of bioinformatics being at its adulthood or beyond, I feel bioinformatics is currently in its prime. If there were just 30% ...
www.biostars.org/.../plos-paper-rise-and-demise-of-bioinform...

Sunisa Chatsurachai, Chikara Furusawa and Hiroshi Shimizu. For all author emails, please log on. BMC Bioinformatics 2012, 13:93 doi:10.1186/1471-2105- 13- ...
www.biomedcentral.com/1471-2105/13/93

Bioinformatics, or the computer analysis of biological data, makes it possible for scientists to make sense of the huge amounts of data contained in the genes of ...
www.unh.edu/.../genomes-bioinformatics-interdisciplinary-col...

The research group for Bioinformatics and Gene Regulation <http://bigr.medisin. ntnu.no/> works in particular on development and use of bioinformatic methods ...
www.ntnu.edu/dmf/ikm/bioinformatics

"...the difference between an 'int' and a 'char'." An ent (sic int) is a tree-like giant of Middle Earth; a char is a tasty cold-water fish. (Sorry, I'm a little punchy from ...
seqanswers.com/forums/showthread.php?p=73444

Bioinformatics Assumes More Comprehensive Role II4. Bioinformatics Definition II4 ... Importance of IP Protection Systems in Bioinformatics II8 ...
www.prnewswire.com/.../global-bioinformatics-industry-1517...

Bioinformatics pipelines are usually custom built for different applications, making themtypically difficult to modify, extend and repurpose. Scientific workflow systems are intendedto address these issues by providing general-purpose frameworks in ...
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Our expertise in bioinformatics software and bioanalytical platforms will provide the tools for the consortium to collect, organize, share and analyze the generated data in conjunction with established databases of biochemical and toxicological ...
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BGI debuts 'EasyGenomics' cloud-based bioinformatics solution for omics …Phys.Org (press release)EasyGenomics integrates various popular next generation sequencing (NGS) analysis workflows including whole genome resequencing, ...
Viral Bioinformatics Resource Center

By Reportlinker This report analyzes the worldwide markets for Bioinformatics in US$ Million by following Product Segments: Software, Hardware, and Biocontent. The report provides separate comprehensive analytics for the US, Canada, Japan, Europe, ...
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This report analyzes the worldwide markets for Bioinformatics in US$ Million by following Product Segments: Software, Hardware, and Biocontent. The report ...
digitaljournal.com/pr/713450

Research Job » Translational Bioinformatics Position-South France. Locate interesting scientific jobs.
www.researchgate.net/.../200516_Translational_Bioinformatic...

Ryong Nam Kim, Dae-Soo Kim, Sang-Haeng Choi, Byoung-Ha Yoon, Aram Kang, Seong-Hyeuk Nam, Dong-Wook Kim, Jong-Joo Kim, Ji-Hong Ha, Atsushi Toyoda, Asao Fujiyama, Aeri Kim, Min-Young Kim, Kun-Hyang Park, Kang Seon Lee, Hong-Seog Park
Apr 3, 2012; 0:111-11

Takeshi Takeuchi, Takeshi Kawashima, Ryo Koyanagi, Fuki Gyoja, Makiko Tanaka, Tetsuro Ikuta, Eiichi Shoguchi, Mayuki Fujiwara, Chuya Shinzato, Kanako Hisata, Manabu Fujie, Takeshi Usami, Kiyohito Nagai, Kaoru Maeyama, Kikuhiko Okamoto, Hideo Aoki, Takashi Ishikawa, Tetsuji Masaoka, Atushi Fujiwara, Kazuyoshi Endo, Hirotoshi Endo, Hiromichi Nagasawa, Shigeharu Kinoshita, Shuichi Asakawa, Shugo Watabe, Nori Satoh
Apr 1, 2012; 19:117-130

Jianzi Huang, Xiang Lu, Hao Yan, Shouyi Chen, Wanke Zhang, Rongfeng Huang, Yizhi Zheng
Apr 1, 2012; 19:195-207

Beide Fu, Shunping He
Apr 1, 2012; 19:131-142

Kai-Fa Wei, Juan Chen, Yan-Feng Chen, Ling-Juan Wu, Dao-Xin Xie
Apr 1, 2012; 19:153-164

Alagu Manickavelu, Kanako Kawaura, Kazuko Oishi, Tadasu Shin-I, Yuji Kohara, Nabila Yahiaoui, Beat Keller, Reina Abe, Ayako Suzuki, Taishi Nagayama, Kentaro Yano, Yasunari Ogihara
Apr 1, 2012; 19:165-177

Akiyoshi Higo, Hirofumi Hara, Sueharu Horinouchi, Yasuo Ohnishi
Mar 26, 2012; 0:101-10

Masanobu Satake, Masakado Kawata, Aoife McLysaght, Takashi Makino
Apr 5, 2012; 0:121-12

Hong Wei Wang, Sun-Goo Hwang, Thirupathi Karuppanapandian, Aihua Liu, Wook Kim, Cheol Seong Jang
Apr 1, 2012; 19:179-194

Shana de Souto Weber, Fernando Hayashi Sant''Anna, Irene Silveira Schrank
Apr 1, 2012; 19:103-115

Philomene Kabran, Tristan Rossignol, Claude Gaillardin, Jean-Marc Nicaud, Cecile Neuveglise
Feb 24, 2012; 0:71-7

Yu Kanesaki, Sousuke Imamura, Ayumi Minoda, Kan Tanaka
Apr 19, 2012; 0:131-13

Kazushi Izawa, Atsushi Hijikata, Naoko Tanaka, Tomoki Kawai, Megumu K Saito, Raphaela Goldbach-Mansky, Ivona Aksentijevich, Takahiro Yasumi, Tatsutoshi Nakahata, Toshio Heike, Ryuta Nishikomori, Osamu Ohara
Apr 1, 2012; 19:143-152

We’ll be having our May 17th webinar today, and we find there are questions to follow up afterwards that are often better handled in discussions on the blog. If there are questions we didn’t have time to get to–or things we want to expand on with more detail–we can discuss them in this thread. Or [...]

BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of thecommunity and find it very useful. Often questions and answers arise at BioStar that are germane to our readers (end users of genomics resources). Every Thursday we will be highlighting one of those questions and answers here in this thread. You [...]

Recently when I was adding videos to our SciVee collection, I noticed that there was a set of new videos about BindingDB. This database has been around for a long time, and I was surprised to realize that we hadn’t covered it yet. And it certainly only grows more important to understand proteins and their [...]

Welcome to our Friday feature link collection: SNPpets. During the week we come across a lot of links and reads that we think are interesting, but don’t make it to a blog post. Here they are for your enjoyment… RT @Dr_Bik: Cool visualization w/dragging ability RT @moorejh: Integrative multi-species prediction http://t.co/vZC0QgLU #bioinformatics #genomics [Mary] From [...]

BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of thecommunity and find it very useful. Often questions and answers arise at BioStar that are germane to our readers (end users of genomics resources). Every Thursday we will be highlighting one of those questions and answers here in this thread. [...]

There is none. Ok, so that is the simple answer. The complicated answer is this: my ideal genome browser iPad app would have the flexibility to go from a mass market browser to look at an individual’s genomic variants in a genomic context with information about the research, genes, etc presented in such a manner [...]

The UCSC Bioinformatics Group announces two free webinars on the UCSC Genome Browser (http://genome.ucsc.edu/). The webinars will be conducted by OpenHelix, the provider of training on 100s of free, publicly accessible bioinformatics and genomics resources. The hour and 15 minute long webinars will cover the topics needed to effectively use this powerful, free, publicly-accessible tool. [...]

As we have in the past, we are offering free webinars in the coming weeks on the UCSC Genome Browser and Advanced discovery using the Table Browser and custom tracks. These have been quite popular in the past, so sign up soon! The Intro to the Genome Browser webinar will be Thursday, May 17th at [...]

Welcome to our Friday feature link collection: SNPpets. During the week we come across a lot of links and reads that we think are interesting, but don’t make it to a blog post. Here they are for your enjoyment… RT @bffo: good read! RT @GenomeRef: GRC: Updating the Human Reference Assembly, part 1 http://t.co/fnwg6itO #genomics [...]

BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of thecommunity and find it very useful. Often questions and answers arise at BioStar that are germane to our readers (end users of genomics resources). Every Thursday we will be highlighting one of those questions and answers here in this thread. [...]

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The shadows lengthen in a guesthouse cafeteria on the sprawling campus of christian Medical College, Vellore, in India. Wrapped up as he is in an issue that has possessed him for years, T. Jacob John notices neither the dying light nor the gathering mosquitoes. He is talking about the oral polio vaccine. [More]

The Advanced Research Projects Agency for Energy (ARPA–E) works on a three-year cycle: Funded projects have three years to prove worthy--or not. Program directors who help fund projects such as Plants Engineered to Replace Petroleum ( PETRO ) or Batteries for Electrical Energy Storage in Transportation ( BEEST ) have three years to steer the research. And, after three years at the helm as the founding director of ARPA–E, mechanical engineer Arun Majumdar has announced that he will be stepping down in June. [More]

In 2010 Brian David Johnson became Intel Corp. 's first futurist, a time-honored title bestowed on prognosticating technology mavens dating back to the likes of Jules Verne and H. G. Wells . Equal parts seer and evangelist, Johnson helps map out the future of technology and then guides his company toward that destination, whether it is five years or even a decade away. [More]

One of the biggest choices an expectant mother faces is how to handle the pain of childbirth. More than 60 per­cent of American women choose relief in the form of an epi­dural, a combination of local anesthetic and narcotic administered into the epidural space surrounding the spinal cord. Although most doctors believe that the injections are safe, a new study suggests that they may increase the risk that a mother will develop a fever during labor, which could, in rare instances, pose risks to her baby. [More]

Mark Pandori was worried. It was 2008, and he had just read the latest in a string of reports from Japan. The articles all described patients infected with a particular strain of gonorrhea that was less susceptible than usual to an important class of antibiotics. Pandori, director of the laboratory at the San Francisco Department of Public Health, knew that gonorrhea had become resistant to other antibiotics in past decades. Each time, the resistance seemed to arise in Asia and spread to California. He wondered if something new was heading across the Pacific. [More]

When the Kentucky Derby winner crosses the finish line in front of 160,000 roaring spectators on May 5, there's a good chance it will have two copies of a gene that makes a horse a sprinter. [More]

The human heart endures a lot in a lifetime. Sophisticated imaging can give insight into what it tolerates and what ails it, but the most direct information comes from an autopsy. [More]

Over the past few years researchers have taken advantage of unprecedented advances in biology, electronics and human genetics to develop an impressive new tool kit for protecting and improving human health. Sophisticated medical technology and complex data analysis are now on the verge of breaking free of their traditional confines in the hospital and computer lab and making their way into our daily lives. [More]

Medical devices sustain and improve the quality of life for millions of Americans. But as the over $100 billion-a-year industry pushes thousands of devices to market every year, reports of faulty devices, repeat surgeries, and recalls have increased. The FDA and the industry maintain that a speedy approval process gives patients faster access to life-saving devices. But critics say that unlike drugs, a substantial number of risky devices are cleared without clinical testing, and receive almost no oversight once on the market. [More]

Apparatus and methods for mapping retinal function: More than two million people older than 40 in the U.S. suffer from glaucoma. The disease--­one of the leading causes of blindness-- is the result of damage to ganglion cells in the retina. Early-stage glaucoma is treatable, and the earlier it is caught, the easier it is to reverse. But catching glaucoma is not easy, because it often starts at the edge of the retina, beyond our usual field of vision. The standard way of detecting it is decades old and involves placing a contact lens with a single electrode embedded within it on the eye. The subject is shown a series of light flashes, and the electrode picks up the electrical responses from the retina. “What’s missing in that signal is any spatial differences in the health of the retina,” says John Hetling, a researcher at the University of Illinois. [More]

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Some years ago two nutrition experts went grocery shopping. For a dollar, Adam Drewnow­ski and S. E. Specter could purchase 1,200 calories of potato chips or cookies or just 250 calories worth of carrots. It was merely one example of how an unhealthy diet is cheaper than a healthy one. This price difference did not spring into existence by force of any natural laws but largely because of antiquated agricultural policies. Public money is working at cross-purposes: backing an overabundance of unhealthful calories that are flooding our supermarkets and restaurants, while also battling obesity and the myriad illnesses that go with it. It is time to align our farm policies with our health policies. [More]

Physicists have been struggling for decades to unify quantum mechanics, which corrals the particle flock, with Einstein’s general theory of relativity, which sculpts space and time. They’ve come at it with various approaches, including string theory, but it remains stubbornly intractable. Yet--taking a common tactic that physicists use to break apart complex challenges--what if we simplified the problem? [More]

Can a psychiatric disorder be diagnosed with a blood test? That may be the future if two recent studies pan out. Researchers are figuring out how to differentiate the blood of a depressed person from that of someone without depression. [More]

By Ewen Callaway of Nature magazine [More]

Your personality says a lot about you. To categorize people by their disposition, psychologists have long relied on questionnaires. Now, however, researchers may be closing in on a tangible view of character in the brain. According to a recent study in PLoS One , resting brain activity varies with a person’s scores on a well-established personality test. When awake but not engaged in a task, each subject displayed activity patterns distinct from those found in someone with different traits. [More]

Blockbuster-moviemaker-turned-aquanaut James Cameron's solo dive in the Pacific to the Mariana Trench's Challenger Deep site last month opens up a vast, under-explored region of the world's oceans to researchers. There, scientists hope to discover, retrieve and study a host of previously unknown organisms and chemical compounds that may someday help solve decades-old medical mysteries. [More]

Farmers have coped with fickle weather since the dawn of human agriculture, and may have even kicked off local climate changes with early forest-clearing and the like. But agriculture has never before faced the extent of the challenge posed by contemporary global warming, which could result in an increase in extreme weather or simply subtle shifts in rainfall patterns that ultimately leave vital crops parched. [More]

More and more women are waiting longer to start a family, thanks to widely available family planning and changing social norms. These days at least one in 12 women has their first child after the age of 35. [More]

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